research-article
Authors: Hanhui Jiang, Bryan Gilbert Murengami, Liguo Jiang, Chi Chen, + 5, Ciaran Johnson, Fernando Auat Cheein, + 3, Spyros Fountas, Rui Li, and Longsheng Fu (Less)
Volume 219, Issue C
Published: 02 July 2024 Publication History
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Highlights
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YOLOv8x with spatial and spectral information is capable for stem segmentation.
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0.1m is a suitable interpolating distance to generate accurate crop height model.
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Height mutation is beneficial to segment dense crop.
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Millimeter-level ground sampling distance facilitates high throughput phenotyping.
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A ratio of 1 for DSM and RGB helps to segment leafy potato stems.
Abstract
High throughput phenotyping of potatoes after canopy consolidation is crucial to crop breeding and management. A prior step is to segment their leafy potato stems, which is challenging after canopy consolidation because potato stems are dense and intertwined. Current methods for dense crop segmentation are manual. This study equipped unmanned aerial vehicles with a high-resolution RGB sensor in ultra-low flight as a high-throughput alternative. An end-to-end method was proposed to segment their leafy potato stems using YOLOv8x and five kinds of band combinations, i.e., RGB, RGB-DSM, RGB-CHM, RGB-DSM×3, RGB-ExG. The YOLOv8x model with the RGB-DSM combination achieved superior performance with F1 score of 0.86 and Intersection over Union (IoU) of 0.83. Both F1 score and IoU improved by more than 16%, when adding DSM or CHM to RGB images. Results demonstrated that height mutation at the edge of leafy potato stems played a crucial role in improving the segmentation of leafy potato stems. Millimeter-level ground sampling distance facilitates high throughput phenotyping of potatoes. The accuracy and efficiency of YOLOv8x has great potential for guiding the phenotypic automation of potatoes as well as other arable crops through remote sensing.
References
[1]
K. Bittner, F. Adam, S. Cui, M. Körner, P. Reinartz, Building footprint extraction from VHR remote sensing images combined with normalized DSMs using fused fully convolutional networks, IEEE J Sel. Top. Appl. Earth Obs. Remote Sens. 11 (2018) 2615–2629,.
[2]
P.V. Bolstad, T.M. Lillesand, Rapid maximum likelihood classification, Photogramm. Eng. Remote Sens. 57 (1991) 67–74.
[3]
W. Dai, B. Yang, Z. Dong, A. Shaker, A new method for 3D individual tree extraction using multispectral airborne LiDAR point clouds, ISPRS J. Photogramm. Remote Sens. 144 (2018) 400–411,.
[4]
C. Fan, R. Lu, UAV image crop classification based on deep learning with spatial and spectral features, IOP Conference Series: Earth and Environmental Science, Vol. 783, No. 1, IOP Publishing, 2021, p. 012080,.
[5]
J.A. Fernandez-Gallego, P. Lootens, I. Borra-Serrano, V. Derycke, G. Haesaert, I. Roldán-Ruiz, J.L. Araus, S.C. Kefauver, Automatic wheat ear counting using machine learning based on RGB UAV imagery, Plant J. 103 (2020) 1603–1613,.
[6]
J. Gené-Mola, R. Sanz-Cortiella, J.R. Rosell-Polo, J.R. Morros, J. Ruiz-Hidalgo, V. Vilaplana, E. Gregorio, Fruit detection and 3D location using instance segmentation neural networks and structure-from-motion photogrammetry, Comput. Electron. Agric. 169 (2020),.
[7]
L. Han, G. Yang, H. Yang, B. Xu, Z. Li, X. Yang, Clustering field-based maize phenotyping of plant-height growth and canopy spectral dynamics using a UAV remote-sensing approach, Front. Plant Sci. 9 (2018) 1638,.
[8]
Z. Hao, L. Lin, C.J. Post, E.A. Mikhailova, M. Li, Y. Chen, K. Yu, J. Liu, Automated tree-crown and height detection in a young forest plantation using mask region-based convolutional neural network (mask R-CNN), ISPRS J. Photogramm. Remote Sens. 178 (2021) 112–123,.
[9]
P. Hu, W. Guo, S.C. Chapman, Y. Guo, B. Zheng, Pixel size of aerial imagery constrains the applications of unmanned aerial vehicle in crop breeding, ISPRS J. Photogramm. Remote Sens. 154 (2019) 1–9,.
[10]
F. Iqbal, A. Lucieer, K. Barry, R. Wells, Poppy crop height and capsule volume estimation from a single UAS flight, Remote Sens. 9 (2017) 24–27,.
[11]
C.M. Johnson, F. Auat Cheein, Machinery for potato harvesting: a state-of-the-art review, Front. Plant Sci. 14 (2023) 1156734,.
[12]
Y. Li, T. Deng, B. Fu, Z. Lao, W. Yang, H. He, D. Fan, W. He, Y. Yao, Evaluation of decision fusions for classifying karst wetland vegetation using one-class and multi-class CNN models with high-resolution UAV images, Remote Sens. 14 (2022),.
[13]
B. Li, X. Xu, J. Han, L. Zhang, C. Bian, L. Jin, J. Liu, The estimation of crop emergence in potatoes by UAV RGB imagery, Plant Methods 15 (2019) 15,.
[14]
B. Li, X. Xu, L. Zhang, J. Han, C. Bian, G. Li, J. Liu, L. Jin, Above-ground biomass estimation and yield prediction in potato by using UAV-based RGB and hyperspectral imaging, ISPRS J. Photogramm. Remote Sens. 162 (2020) 161–172,.
[15]
Y. Lin, S. Li, S. Duan, Y. Ye, B. Li, G. Li, D. Lyv, L. Jin, C. Bian, J. Liu, Methodological evolution of potato yield prediction: a comprehensive review, Front. Plant Sci. 14 (2023) 1214006,.
[16]
F. Liu, P. Hu, B. Zheng, T. Duan, B. Zhu, Y. Guo, A field-based high-throughput method for acquiring canopy architecture using unmanned aerial vehicle images, Agric. For. Meteorol. 296 (2021),.
[17]
Y. Liu, J. Huang, Q. Sun, H. Feng, G. Yang, F. Yang, Estimation of plant height and above ground biomass of potato based on UAV digital image, Natl. Remote Sens. Bull. 25 (2021) 2004–2014,.
[18]
Y. Liu, H. Feng, J. Yue, Z. Li, G. Yang, X. Song, X. Yang, Y. Zhao, Remote-sensing estimation of potato above-ground biomass based on spectral and spatial features extracted from high-definition digital camera images, Comput. Electron. Agric. 198 (2022),.
Digital Library
[19]
B. Ma, J. Du, L. Wang, H. Jiang, M. Zhou, Automatic branch detection of jujube trees based on 3D reconstruction for dormant pruning using the deep learning-based method, Comput. Electron. Agric. 190 (2021),.
Digital Library
[20]
Y. Majeed, J. Zhang, X. Zhang, L. Fu, M. Karkee, Q. Zhang, Deep learning based segmentation for automated training of apple trees on trellis wires, Comput. Electron. Agric. 170 (2020),.
Digital Library
[21]
L. Malambo, S.C. Popescu, D.W. Horne, N.A. Pugh, W.L. Rooney, Automated detection and measurement of individual sorghum panicles using density-based clustering of terrestrial lidar data, ISPRS J. Photogramm. Remote Sens. 149 (2019) 1–13,.
[22]
J.K. Mhango, E.W. Harris, R. Green, J.M. Monaghan, Mapping potato plant density variation using aerial imagery and deep learning techniques for precision agriculture, Remote Sens. 13 (2021) 2705,.
[23]
J.K. Mhango, I.G. Grove, W. Hartley, E.W. Harris, J.M. Monaghan, Applying colour-based feature extraction and transfer learning to develop a high throughput inference system for potato (Solanum tuberosum L.) stems with images from unmanned aerial vehicles after canopy consolidation, Precis. Agric. 23 (2022) 643–669,.
[24]
P. Nie, C. Qian, R. Qin, S. Deng, C. Sun, Y. He, Development status and trends of space-air-groound integrated information sensing and fusion technology, J. Intell. Agric. Mech. 4 (2) (2023) 1–11,.
[25]
B. Niu, Q. Feng, B. Chen, C. Ou, Y. Liu, J. Yang, HSI-TransUNet: a transformer based semantic segmentation model for crop mapping from UAV hyperspectral imagery, Comput. Electron. Agric. 201 (2022),.
Digital Library
[26]
L.P. Osco, K. Nogueira, A.P. Marques Ramos, M.M. Faita Pinheiro, D.E.G. Furuya, W.N. Gonçalves, L.A. de Castro Jorge, J. Marcato Junior, J.A. dos Santos, Semantic segmentation of citrus-orchard using deep neural networks and multispectral UAV-based imagery, Precis. Agric. 22 (2021) 1171–1188,.
[27]
Y. Qiao, Q. Liao, M. Zhang, B. Han, C. Peng, Z. Huang, S. Wang, G. Zhou, S. Xu, Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping, Front. Plant Sci. 14 (2023) 1188286,.
[28]
M. Schirrmann, A. Hamdorf, A. Giebel, F. Gleiniger, M. Pflanz, K.H. Dammer, Regression kriging for improving crop height models fusing ultra-sonic sensing with UAV imagery, Remote Sens. 9 (2017) 665,.
[29]
J. Siebring, J. Valente, M.H.D. Franceschini, J. Kamp, L. Kooistra, Object-based image analysis applied to low altitude aerial imagery for potato plant trait retrieval and pathogen detection, Sensors 19 (2019) 5477,.
[30]
C. Silva-Díaz, D.A. Ramírez, J. Rinza, J. Ninanya, H. Loayza, R. Gómez, N.L. Anglin, R. Eyzaguirre, R. Quiroz, Radiation interception, conversion and partitioning efficiency in potato landraces: how far are we from the optimum?, Plants 9 (2020) 787,.
[31]
J. ten Harkel, H. Bartholomeus, L. Kooistra, Biomass and crop height estimation of different crops using UAV-based LiDAR, Remote Sens. 12 (2020) 17,.
[32]
N. Tilly, D. Hoffmeister, H. Schiedung, C. Hütt, J. Brands, G. Bareth, Terrestrial laser scanning for plant height measurement and biomass estimation of maize, international archives of the photogrammetry, remote sensing and spatial, Inf. Sci. (2014) 181–187,.
[33]
UN Food & Agriculture Organization, 2023. Production of potatoes by the world. https://www.fao.org/faostat/en/#data. Accessed October 11, 2023.
[34]
S. Xiao, Y. Ye, S. Fei, H. Chen, Z. Cai, Y. Che, Q. Wang, A. Ghafoor, K. Bi, K. Shao, R. Wang, High-throughput calculation of organ-scale traits with reconstructed accurate 3D canopy structures using a UAV RGB camera with an advanced cross-circling oblique route, ISPRS J. Photogramm. Remote Sens. 201 (2023) 104–122,.
[35]
R. Yang, Q. Dai, H. Cheng, Y. Zhang, N. Chen, L. Wang, Improving semantic segmentation performance by jointly using high resolution remote sensing image and NDSM, ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences. (2022) 77–83,.
[36]
B. Yang, Y. Zhu, S. Zhou, Accurate wheat lodging extraction from multi-channel uav images using a lightweight network model, Sensors 21 (2021) 6286,.
[37]
C. Zheng, A. Abd-Elrahman, V.M. Whitaker, C. Dalid, Deep learning for strawberry canopy delineation and biomass prediction from high-resolution images, Plant Phenomics 2022 (2022) 9850486,.
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Information
Published In
Computers and Electronics in Agriculture Volume 219, Issue C
Apr 2024
1160 pages
ISSN:0168-1699
Issue’s Table of Contents
Elsevier B.V.
Publisher
Elsevier Science Publishers B. V.
Netherlands
Publication History
Published: 02 July 2024
Author Tags
- Deep learning
- Instance segmentation
- Potato phenotyping
- Spectral feature
- UAV imagery
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- Research-article
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